simbiology® software Search Results


simbiology  (MathWorks Inc)
97
MathWorks Inc simbiology
An overview of available software packages and tools used by the Subcellular Workflow. Sometimes, manual intervention is needed in between workflow modules. This is especially true when an input format does not have a feature that an output format has. Additionally, some software packages have so many functions that it could be easier to use them interactively (in these cases we also added a yes in the manual intervention column)
Simbiology, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 97/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/simbiology/product/MathWorks Inc
Average 97 stars, based on 1 article reviews
simbiology - by Bioz Stars, 2026-03
97/100 stars
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matlab simbiology software  (MathWorks Inc)
90
MathWorks Inc matlab simbiology software
An overview of available software packages and tools used by the Subcellular Workflow. Sometimes, manual intervention is needed in between workflow modules. This is especially true when an input format does not have a feature that an output format has. Additionally, some software packages have so many functions that it could be easier to use them interactively (in these cases we also added a yes in the manual intervention column)
Matlab Simbiology Software, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/matlab simbiology software/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
matlab simbiology software - by Bioz Stars, 2026-03
90/100 stars
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simbiology toolbox matlab software version r2018b  (MathWorks Inc)
90
MathWorks Inc simbiology toolbox matlab software version r2018b
An overview of available software packages and tools used by the Subcellular Workflow. Sometimes, manual intervention is needed in between workflow modules. This is especially true when an input format does not have a feature that an output format has. Additionally, some software packages have so many functions that it could be easier to use them interactively (in these cases we also added a yes in the manual intervention column)
Simbiology Toolbox Matlab Software Version R2018b, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/simbiology toolbox matlab software version r2018b/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
simbiology toolbox matlab software version r2018b - by Bioz Stars, 2026-03
90/100 stars
  Buy from Supplier
simbiology matlab software  (MathWorks Inc)
90
MathWorks Inc simbiology matlab software
An overview of available software packages and tools used by the Subcellular Workflow. Sometimes, manual intervention is needed in between workflow modules. This is especially true when an input format does not have a feature that an output format has. Additionally, some software packages have so many functions that it could be easier to use them interactively (in these cases we also added a yes in the manual intervention column)
Simbiology Matlab Software, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/simbiology matlab software/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
simbiology matlab software - by Bioz Stars, 2026-03
90/100 stars
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matlab® software  (MathWorks Inc)
90
MathWorks Inc matlab® software
An overview of available software packages and tools used by the Subcellular Workflow. Sometimes, manual intervention is needed in between workflow modules. This is especially true when an input format does not have a feature that an output format has. Additionally, some software packages have so many functions that it could be easier to use them interactively (in these cases we also added a yes in the manual intervention column)
Matlab® Software, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/matlab® software/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
matlab® software - by Bioz Stars, 2026-03
90/100 stars
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simbiology software  (MathWorks Inc)
90
MathWorks Inc simbiology software
An overview of available software packages and tools used by the Subcellular Workflow. Sometimes, manual intervention is needed in between workflow modules. This is especially true when an input format does not have a feature that an output format has. Additionally, some software packages have so many functions that it could be easier to use them interactively (in these cases we also added a yes in the manual intervention column)
Simbiology Software, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/simbiology software/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
simbiology software - by Bioz Stars, 2026-03
90/100 stars
  Buy from Supplier
simbiology® software  (MathWorks Inc)
90
MathWorks Inc simbiology® software
An overview of available software packages and tools used by the Subcellular Workflow. Sometimes, manual intervention is needed in between workflow modules. This is especially true when an input format does not have a feature that an output format has. Additionally, some software packages have so many functions that it could be easier to use them interactively (in these cases we also added a yes in the manual intervention column)
Simbiology® Software, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/simbiology® software/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
simbiology® software - by Bioz Stars, 2026-03
90/100 stars
  Buy from Supplier
matlab simbiology  (MathWorks Inc)
90
MathWorks Inc matlab simbiology
An overview of available software packages and tools used by the Subcellular Workflow. Sometimes, manual intervention is needed in between workflow modules. This is especially true when an input format does not have a feature that an output format has. Additionally, some software packages have so many functions that it could be easier to use them interactively (in these cases we also added a yes in the manual intervention column)
Matlab Simbiology, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/matlab simbiology/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
matlab simbiology - by Bioz Stars, 2026-03
90/100 stars
  Buy from Supplier
simbiology toolbox  (MathWorks Inc)
90
MathWorks Inc simbiology toolbox
An overview of available software packages and tools used by the Subcellular Workflow. Sometimes, manual intervention is needed in between workflow modules. This is especially true when an input format does not have a feature that an output format has. Additionally, some software packages have so many functions that it could be easier to use them interactively (in these cases we also added a yes in the manual intervention column)
Simbiology Toolbox, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/simbiology toolbox/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
simbiology toolbox - by Bioz Stars, 2026-03
90/100 stars
  Buy from Supplier
solution simbiology matlab software  (MathWorks Inc)
90
MathWorks Inc solution simbiology matlab software
An overview of available software packages and tools used by the Subcellular Workflow. Sometimes, manual intervention is needed in between workflow modules. This is especially true when an input format does not have a feature that an output format has. Additionally, some software packages have so many functions that it could be easier to use them interactively (in these cases we also added a yes in the manual intervention column)
Solution Simbiology Matlab Software, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/solution simbiology matlab software/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
solution simbiology matlab software - by Bioz Stars, 2026-03
90/100 stars
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r2016a simbiology software package  (MathWorks Inc)
90
MathWorks Inc r2016a simbiology software package
An overview of available software packages and tools used by the Subcellular Workflow. Sometimes, manual intervention is needed in between workflow modules. This is especially true when an input format does not have a feature that an output format has. Additionally, some software packages have so many functions that it could be easier to use them interactively (in these cases we also added a yes in the manual intervention column)
R2016a Simbiology Software Package, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/r2016a simbiology software package/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
r2016a simbiology software package - by Bioz Stars, 2026-03
90/100 stars
  Buy from Supplier
computer software programme  (SAS institute)
90
SAS institute computer software programme
An overview of available software packages and tools used by the Subcellular Workflow. Sometimes, manual intervention is needed in between workflow modules. This is especially true when an input format does not have a feature that an output format has. Additionally, some software packages have so many functions that it could be easier to use them interactively (in these cases we also added a yes in the manual intervention column)
Computer Software Programme, supplied by SAS institute, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/computer software programme/product/SAS institute
Average 90 stars, based on 1 article reviews
computer software programme - by Bioz Stars, 2026-03
90/100 stars
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Image Search Results


An overview of available software packages and tools used by the Subcellular Workflow. Sometimes, manual intervention is needed in between workflow modules. This is especially true when an input format does not have a feature that an output format has. Additionally, some software packages have so many functions that it could be easier to use them interactively (in these cases we also added a yes in the manual intervention column)

Journal: Neuroinformatics

Article Title: A Modular Workflow for Model Building, Analysis, and Parameter Estimation in Systems Biology and Neuroscience

doi: 10.1007/s12021-021-09546-3

Figure Lengend Snippet: An overview of available software packages and tools used by the Subcellular Workflow. Sometimes, manual intervention is needed in between workflow modules. This is especially true when an input format does not have a feature that an output format has. Additionally, some software packages have so many functions that it could be easier to use them interactively (in these cases we also added a yes in the manual intervention column)

Article Snippet: In this particular use case, we specifically focused on creating scripts to achieve interoperability between human readable model specification standards and machine- readable standards, and we also wanted to facilitate how a subcellular signaling model could be implemented in different solvers with different strengths, in this case both SimBiology® in MATLAB®, as well as STEPS and NEURON.

Techniques: Software, Plasmid Preparation, Functional Assay

Simulations in identical conditions in both MATLAB® SimBiology® and COPASI yielded almost identical results. A Inputs used in both simulators. The calcium input is kept constant at 4 s for all simulations and dopamine input time is varied from time 0 to 8 s at every one second. The difference from the previous simulations is in the calcium input which, for the sake of simplicity, is represented by a double exponential spike. B and C show substrate phosphorylation curves analogous to Fig. , the red line represents results obtained in MATLAB® and blue line results from simulations in COPASI. A single 30 s simulation took around 10 s of compute time within a 1 fl spine volume (Intel® Core™ i7-8750H)

Journal: Neuroinformatics

Article Title: A Modular Workflow for Model Building, Analysis, and Parameter Estimation in Systems Biology and Neuroscience

doi: 10.1007/s12021-021-09546-3

Figure Lengend Snippet: Simulations in identical conditions in both MATLAB® SimBiology® and COPASI yielded almost identical results. A Inputs used in both simulators. The calcium input is kept constant at 4 s for all simulations and dopamine input time is varied from time 0 to 8 s at every one second. The difference from the previous simulations is in the calcium input which, for the sake of simplicity, is represented by a double exponential spike. B and C show substrate phosphorylation curves analogous to Fig. , the red line represents results obtained in MATLAB® and blue line results from simulations in COPASI. A single 30 s simulation took around 10 s of compute time within a 1 fl spine volume (Intel® Core™ i7-8750H)

Article Snippet: In this particular use case, we specifically focused on creating scripts to achieve interoperability between human readable model specification standards and machine- readable standards, and we also wanted to facilitate how a subcellular signaling model could be implemented in different solvers with different strengths, in this case both SimBiology® in MATLAB®, as well as STEPS and NEURON.

Techniques: Phospho-proteomics